PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00001299-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 347aa    MW: 38498.8 Da    PI: 6.3752
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00001299-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.1e-09260303755
                         HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ++ ++RR+ri +++  L+el+P+       K++ +++LekA+ Y+k Lq
  WALNUT_00001299-RA 260 IAAKNRRERISERLKVLQELVPNG-----SKVDLVTMLEKAISYVKFLQ 303
                         5679*******************5.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.5E-12250310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-14251312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.339253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.65E-11259307No hitNo description
SMARTSM003538.5E-12259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-7261303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MALAKDQMPH DSCMGYVQVP GFSSPGPYAV DHDHGHSKAV LQEEDFLENG VVIKDIGMGH  60
SSSVLFGPCS SVNSNASFVF TATSNYQPEE AADHSLIDFK GGYGNFMHAC ESLLSFEQSE  120
RASLNSNFLK TNNHKDEYSM WEQANFSQNY QRNQISTTTP KCGTDPRLLE ELSCFQTASN  180
DSSITNTSAK EREHGEDGTY GWLYSEATVV TDSIQESTHE TSFHKRVHMG ERTQALKKQC  240
TNANKKPKPK SSSPKDPQSI AAKNRRERIS ERLKVLQELV PNGSKVDLVT MLEKAISYVK  300
FLQLQVKVLA TDEFWPAQGG KAPDISQVKE AIDAILSSQR DRNSSSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007033052.11e-116Rhd six-like 1, putative
TrEMBLD7TSR61e-121D7TSR6_VITVI; Putative uncharacterized protein
STRINGVIT_14s0006g01470.t011e-121(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49373253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.15e-61ROOT HAIR DEFECTIVE6